Having trouble synchronising files between Linux and Windows

[zalithka]

Greetings.. :)

My workplace runs a Windows network environment, whereas lately I've taken
quite a liking to Linux at home.. As I work predominantly with web
technology, I end up working on various HTML, JS and Java files in both
locations. The problem is, the Windows and Linux variations of FFS seem to
use a different database filename to store the synchronisation history;
using "sync.ffs_db" in Windows and ".sync.ffs_db" in Linux.

I'm not sure what internal format these files use, so I haven't been able
to compare their structure, but I was just wondering if anybody else does
this sort of synchronisation and how if there's any workaround for it? Been
a fan of FFS for a very long time and I'd prefer to not change my sync app
just for this.

Any suggestions?